Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2773

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11140 and 11141 are separated by 521 nucleotides mRNA_2772: 11140 - SUPERFAMILY--SSF56112, at 177,192 to 178,295 11140 mRNA_2773: 11141 - K02953 RP-S13e, RPS13 small subunit ribosomal protein S13e, at 178,817 to 179,625 11141

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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177,827 + 11140 mRNA_2772 0.58 +0.6
177,832 - 11140 mRNA_2772 0.58 -1.2
177,869 - 11140 mRNA_2772 0.61 +0.5
177,974 + 11140 mRNA_2772 0.71 +0.4
178,242 + -1.8
178,296 + -2.0
178,417 - +1.8
178,586 - -3.8
180,287 - +1.7

Or see this region's nucleotide sequence