Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2777

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11144 and 11145 are separated by 645 nucleotides mRNA_2776: 11144 - K14292 TGS1 trimethylguanosine synthase, at 183,989 to 185,404 11144 mRNA_2777: 11145 - K00948 PRPS, prsA ribose-phosphate pyrophosphokinase, at 186,050 to 187,746 11145

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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185,168 - 11144 mRNA_2776 0.83 -0.6
185,168 + 11144 mRNA_2776 0.83 -0.2
185,284 + -1.1
185,320 - -1.9
185,323 + +0.4
185,330 + +1.8
185,353 + +0.4
185,359 - +0.6
185,616 - +1.3
185,748 - +0.8
185,754 - +0.5
185,761 + -0.4
186,482 + 11145 mRNA_2777 0.25 -1.2
187,939 - +1.7
187,949 - -1.4
187,952 + -0.9
188,093 + +0.0
188,523 + -0.3
188,527 + +0.0
188,528 - +0.4
188,649 + -0.4

Or see this region's nucleotide sequence