Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2913

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11280 and 11281 are separated by 288 nucleotides mRNA_2912: 11280 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 521,953 to 523,755 11280 mRNA_2913: 11281 - K13703 ABHD11 abhydrolase domain-containing protein 11, at 524,044 to 525,341 11281

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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523,496 - 11280 mRNA_2912 0.86 +0.0
523,618 - +1.1
523,779 - +1.5
524,225 - 11281 mRNA_2913 0.14 +0.2
524,231 - 11281 mRNA_2913 0.14 +0.6
524,608 + 11281 mRNA_2913 0.43 -1.3
524,755 - 11281 mRNA_2913 0.55 -0.4
524,920 - 11281 mRNA_2913 0.67 +0.1
525,072 - 11281 mRNA_2913 0.79 -0.7
525,076 - 11281 mRNA_2913 0.80 -1.0
525,084 - 11281 mRNA_2913 0.80 -0.6
525,109 + 11281 mRNA_2913 0.82 +0.2
525,246 - -1.2
525,377 + +0.2
525,387 - +0.8
525,618 - -0.4
525,627 - +1.9
525,628 - +0.5
525,711 + -2.7
525,770 - +1.2
525,806 - -1.1
525,839 + +0.5
525,840 - -1.1
525,841 + -0.1
525,893 - +0.5
525,903 + -0.9
525,934 - +0.8
525,943 + -0.3
526,072 - -0.3
526,078 - -2.3
526,081 + +0.6
526,084 + +0.8
526,179 + +0.9
526,235 - -0.9
526,247 + +0.5
526,251 + -0.5

Or see this region's nucleotide sequence