Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2929

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11296 and 11297 are separated by 496 nucleotides11297 and 11298 are separated by 475 nucleotides mRNA_2928: 11296 - Hypothetical Protein, at 574,492 to 576,496 11296 mRNA_2929: 11297 - Hypothetical Protein, at 576,993 to 577,700 11297 mRNA_2930: 11298 - Interpro Nbl1 / Borealin N terminal, at 578,176 to 578,978 11298

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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576,030 - 11296 mRNA_2928 0.77 -0.8
576,225 - 11296 mRNA_2928 0.86 -0.1
576,245 - 11296 mRNA_2928 0.87 +0.8
576,620 + +2.1
576,639 - +1.7
576,904 + -1.5
576,912 + +0.2
577,194 + 11297 mRNA_2929 0.28 -0.7

Or see this region's nucleotide sequence