Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2963

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11330 and 11331 are separated by 555 nucleotides mRNA_2962: 11330 - KOG3841 TEF-1 and related transcription factor, TEAD family, at 658,359 to 659,860 11330 mRNA_2963: 11331 - K01647 CS, gltA citrate synthase, at 660,416 to 662,957 11331

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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659,958 + -1.6
660,064 + -1.4
660,068 - -2.2
660,102 - +0.9
660,210 - -2.2
662,698 + 11331 mRNA_2963 0.90 +0.7
663,005 - +1.6
663,022 - +1.6
663,024 + +0.2
663,034 - -0.3
663,038 + -0.1
663,040 - +1.0
663,041 + -1.8
663,041 - -0.8
663,044 - -0.2
663,049 - +1.2
663,052 - +1.7
663,053 - -0.2
663,055 + +2.6
663,060 - +1.5
663,062 - +1.0
663,074 + -2.2
663,106 + -0.0
663,186 - +1.7
663,190 - +0.6
663,193 + +0.0
663,196 - +1.4
663,205 + -1.3
663,209 + +0.5
663,219 + +0.4
663,220 - -0.2
663,221 - -0.0
663,226 + -1.0
663,228 - -0.1
663,230 - +1.1
663,233 - -1.3
663,233 + +0.1
663,236 + -0.2
663,240 + +0.3
663,243 + +3.8
663,249 + -0.5
663,368 + +0.2
663,405 - -0.5
663,425 + -1.5
663,436 - -0.6
663,499 + -1.6
663,508 - +0.4
663,680 - +1.5
663,692 + -0.1
663,848 + +0.7

Or see this region's nucleotide sequence