Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3008

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11375 and 11376 are separated by 250 nucleotides11376 and 11377 are separated by 186 nucleotides mRNA_3007: 11375 - K15119 SLC25A39_40 solute carrier family 25, member 39/40, at 57,781 to 59,867 11375 mRNA_3008: 11376 - HMMPfam-Inositol hexakisphosphate-PF14566,SUPERFAMILY--SSF52799, at 60,118 to 65,560 11376 mRNA_3009: 11377 - Hypothetical Protein, at 65,747 to 66,498 11377

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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60,035 + +0.3
60,203 + +0.1
60,230 + -0.7
60,334 - -0.8
60,402 - -0.9
60,806 - 11376 mRNA_3008 0.13 +2.3
60,810 + 11376 mRNA_3008 0.13 +0.3
60,859 - 11376 mRNA_3008 0.14 -0.3
61,216 - 11376 mRNA_3008 0.20 +1.6
61,250 - 11376 mRNA_3008 0.21 -2.2
61,377 - 11376 mRNA_3008 0.23 -0.6
61,399 + 11376 mRNA_3008 0.24 -0.9
61,646 + 11376 mRNA_3008 0.28 -1.6
61,910 + 11376 mRNA_3008 0.33 +0.6
62,411 - 11376 mRNA_3008 0.42 +2.8
62,673 + 11376 mRNA_3008 0.47 -1.5
62,674 - 11376 mRNA_3008 0.47 -1.1
62,682 + 11376 mRNA_3008 0.47 +1.2
62,728 + 11376 mRNA_3008 0.48 -0.4
62,730 - 11376 mRNA_3008 0.48 -0.8
62,955 - 11376 mRNA_3008 0.52 +0.1
63,159 + 11376 mRNA_3008 0.56 -1.6
63,812 - 11376 mRNA_3008 0.68 -1.6
63,848 - 11376 mRNA_3008 0.69 -0.7
63,980 + 11376 mRNA_3008 0.71 +0.9
63,988 - 11376 mRNA_3008 0.71 +0.1
64,145 - 11376 mRNA_3008 0.74 -1.0
64,169 - 11376 mRNA_3008 0.74 +1.3
64,275 + 11376 mRNA_3008 0.76 +0.0
64,407 - 11376 mRNA_3008 0.79 +1.6
64,626 + 11376 mRNA_3008 0.83 +0.8
64,737 - 11376 mRNA_3008 0.85 +0.2
64,742 - 11376 mRNA_3008 0.85 -1.1
64,977 + 11376 mRNA_3008 0.89 +0.1
65,134 + +0.4
65,145 + +1.3
65,154 - +0.2
65,160 + -0.3
65,185 + +1.2
65,286 - +0.3
65,300 - +2.3
65,314 + +0.1
65,329 - +1.6
65,408 + -1.8
65,414 - -0.0
65,457 - -0.5
65,466 - -0.4
65,570 + +0.4
65,591 + +2.0
65,595 + -0.6
65,601 + -0.5
65,620 + -0.6
65,727 - -0.6
65,758 + +0.3
65,912 - 11377 mRNA_3009 0.22 -1.4
65,913 + 11377 mRNA_3009 0.22 +0.0
65,914 + 11377 mRNA_3009 0.22 -0.6
65,918 + 11377 mRNA_3009 0.23 +1.8
65,939 - 11377 mRNA_3009 0.26 -0.3
65,941 + 11377 mRNA_3009 0.26 -1.0
66,007 + 11377 mRNA_3009 0.35 -1.8
66,015 - 11377 mRNA_3009 0.36 +2.5
66,018 + 11377 mRNA_3009 0.36 -0.8
66,033 + 11377 mRNA_3009 0.38 -0.0
66,052 - 11377 mRNA_3009 0.41 -0.2
66,073 - 11377 mRNA_3009 0.43 +0.6
66,077 - 11377 mRNA_3009 0.44 +0.9
66,335 - 11377 mRNA_3009 0.78 +2.9

Or see this region's nucleotide sequence