Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3096

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11463 and 11464 are separated by 251 nucleotides11464 and 11465 are separated by 231 nucleotides mRNA_3095: 11463 - K01739 metB cystathionine gamma-synthase, at 307,460 to 310,020 11463 mRNA_3096: 11464 - K17262 TBCB, CKAP1, ALF1 tubulin-folding cofactor B, at 310,272 to 311,367 11464 mRNA_3097: 11465 - K00591 COQ3 polyprenyldihydroxybenzoate methyltransferase / 3-demethylubiquinol 3-O-methyltransferase, at 311,599 to 312,739 11465

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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309,341 - 11463 mRNA_3095 0.73 +0.1
309,354 - 11463 mRNA_3095 0.74 -2.8
309,460 - 11463 mRNA_3095 0.78 -0.0
309,505 + 11463 mRNA_3095 0.80 -1.4
309,515 - 11463 mRNA_3095 0.80 +0.9
309,591 - 11463 mRNA_3095 0.83 -3.2
309,647 + 11463 mRNA_3095 0.85 +0.7
309,662 - 11463 mRNA_3095 0.86 -0.1
309,768 + -0.5
309,777 - -1.6
309,782 - -1.1
309,796 - +1.6
309,800 - -0.6
309,936 + -1.3
309,968 + -1.2
309,970 + +0.0
309,984 + +1.8
310,058 + -0.4
310,075 + +1.1
310,081 + +1.7
310,084 - -0.2
310,087 + -0.2
310,096 - -1.2
310,097 + +2.1
310,105 + +0.6
310,107 + -0.2
310,108 - +0.8
310,113 - +0.8
310,122 - +0.3
310,123 + -1.4
310,155 - -1.6
310,249 - -1.2
310,255 + +1.9
310,264 - +0.5
310,272 - -0.3
310,276 + +1.2
310,293 + -0.2
310,375 + +1.2
310,387 + 11464 mRNA_3096 0.10 +0.2
310,397 - 11464 mRNA_3096 0.11 -1.3
310,397 - 11464 mRNA_3096 0.11 +0.0
310,399 - 11464 mRNA_3096 0.12 -1.0
310,403 + 11464 mRNA_3096 0.12 -0.6
310,407 + 11464 mRNA_3096 0.12 +0.9
310,415 + 11464 mRNA_3096 0.13 -1.5
310,423 + 11464 mRNA_3096 0.14 -0.8
310,509 - 11464 mRNA_3096 0.22 +0.5
310,520 + 11464 mRNA_3096 0.23 +0.4
310,531 - 11464 mRNA_3096 0.24 -0.1
310,550 - 11464 mRNA_3096 0.25 -0.9
310,563 + 11464 mRNA_3096 0.27 +2.2
310,566 - 11464 mRNA_3096 0.27 -0.4
310,571 - 11464 mRNA_3096 0.27 +0.5
310,692 + 11464 mRNA_3096 0.38 +0.1
310,693 + 11464 mRNA_3096 0.38 -1.4
310,851 + 11464 mRNA_3096 0.53 -0.7
310,993 - 11464 mRNA_3096 0.66 -3.5
311,068 - 11464 mRNA_3096 0.73 +1.3
311,120 + 11464 mRNA_3096 0.77 +0.6
311,310 + -1.9
311,321 - -0.9
311,400 - -0.2
311,405 - -0.2
311,545 - +2.6
311,558 - -1.6
311,564 - -0.4
311,564 - +0.5
311,565 - -1.0
311,568 - -0.7
311,577 + -1.4
311,583 + -0.6
311,589 + -0.7
311,592 + -0.4
311,670 - +0.5
311,704 + -0.2
311,717 + 11465 mRNA_3097 0.10 -0.2
311,725 + 11465 mRNA_3097 0.11 -0.7
311,758 + 11465 mRNA_3097 0.14 +1.4
311,850 - 11465 mRNA_3097 0.22 -0.0
311,869 - 11465 mRNA_3097 0.24 -1.0
312,026 - 11465 mRNA_3097 0.37 -0.9
312,032 + 11465 mRNA_3097 0.38 +0.2
312,136 + 11465 mRNA_3097 0.47 -1.8
312,233 + 11465 mRNA_3097 0.56 -0.5

Or see this region's nucleotide sequence