Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3121

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11488 and 11489 are separated by 9 nucleotides11489 and 11490 are separated by 520 nucleotides mRNA_3120: 11488 - BLAST Protein cps3 [Rhizoctonia solani], at 367,437 to 369,368 11488 mRNA_3121: 11489 - KOG1039 Predicted E3 ubiquitin ligase, at 369,378 to 369,678 11489 mRNA_3122: 11490 - K05290 PIGK phosphatidylinositol glycan, class K, at 370,199 to 371,731 11490

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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368,502 + 11488 mRNA_3120 0.55 -0.1
368,540 + 11488 mRNA_3120 0.57 -0.0
368,552 + 11488 mRNA_3120 0.58 +0.2
368,665 - 11488 mRNA_3120 0.64 -0.5
368,683 - 11488 mRNA_3120 0.64 +0.3
368,698 + 11488 mRNA_3120 0.65 -1.8
368,809 - 11488 mRNA_3120 0.71 -0.1
368,918 + 11488 mRNA_3120 0.77 -0.3
368,966 + 11488 mRNA_3120 0.79 +0.4
368,967 + 11488 mRNA_3120 0.79 +0.2
368,975 + 11488 mRNA_3120 0.80 +0.5
369,079 + 11488 mRNA_3120 0.85 +1.9
369,090 + 11488 mRNA_3120 0.86 +1.4
369,227 - +0.5
369,231 - +2.3
369,236 - -0.4
369,237 - -0.2
369,239 + +0.1
369,268 - -1.7
369,302 + -0.1
369,370 - -0.3
369,372 - -0.4
369,394 + -0.5
369,402 - -0.7
369,521 - 11489 mRNA_3121 0.48 -1.8
369,635 + 11489 mRNA_3121 0.85 -0.5
369,665 - +0.5
369,705 + +0.1
369,706 - +0.4
369,710 + +0.3
369,828 - -0.6
369,834 - -2.2
369,968 - +0.5
369,972 - -0.4
369,980 + -1.1
369,994 - +1.5
370,120 - +0.5
370,127 + -0.7
370,128 - -1.3
370,140 - -0.7
370,144 - +0.0
370,145 + -3.2
370,145 + -0.6
370,156 - -0.2
370,159 + -1.1
370,281 - +0.4
370,287 - -0.5
370,336 + +3.0
370,392 - 11490 mRNA_3122 0.13 +0.4
370,581 - 11490 mRNA_3122 0.25 -0.9

Or see this region's nucleotide sequence