Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3130

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11498 and 11499 are separated by 306 nucleotides mRNA_3130: 11498 - KOG2109 WD40 repeat protein, at 387,441 to 391,334 11498 mRNA_3131: 11499 - KOG1230 Protein containing repeated kelch motifs, at 391,641 to 394,728 11499

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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386,534 + -0.9
386,545 - -1.1
386,549 - -0.1
386,566 - +0.3
386,713 - +0.1
386,731 + +0.8
386,845 - +0.1
386,855 - +0.3
387,131 + -1.1
387,132 - -0.4
387,132 - +0.8
387,145 + -0.5
387,148 + -0.2
387,152 - -0.2
387,154 + +0.4
387,154 + -1.1
387,159 + -0.9
387,161 + -1.5
387,168 + -0.1
387,173 + -1.5
387,292 - +1.9
387,300 + -0.6
387,307 + +0.8
387,308 - -0.0
387,312 - +0.2
387,313 + -1.1
387,332 + -0.2
387,333 + -0.1
387,464 - +0.2
387,465 - -0.1
387,472 + -0.1
387,489 + -0.4
387,515 + -1.0
387,607 + -0.5
387,608 - -0.3
387,617 - -0.7
387,633 + -0.2
387,894 - 11498 mRNA_3130 0.12 +1.2
387,899 + 11498 mRNA_3130 0.12 -0.4
387,899 + 11498 mRNA_3130 0.12 +1.2
388,068 + 11498 mRNA_3130 0.16 -0.3
388,225 - 11498 mRNA_3130 0.20 -0.3
388,343 - 11498 mRNA_3130 0.23 -1.2
388,364 - 11498 mRNA_3130 0.24 -1.1
388,371 + 11498 mRNA_3130 0.24 +0.2
388,444 - 11498 mRNA_3130 0.26 +2.5
388,463 + 11498 mRNA_3130 0.26 -0.2
388,471 - 11498 mRNA_3130 0.26 +0.6
388,752 + 11498 mRNA_3130 0.34 -0.1
388,914 + 11498 mRNA_3130 0.38 +0.2
389,076 - 11498 mRNA_3130 0.42 +1.1
389,124 - 11498 mRNA_3130 0.43 +1.2
389,222 - 11498 mRNA_3130 0.46 +0.5
389,392 + 11498 mRNA_3130 0.50 -1.6
389,397 - 11498 mRNA_3130 0.50 +0.7
389,510 + 11498 mRNA_3130 0.53 +0.5
389,779 - 11498 mRNA_3130 0.60 +0.9
389,834 + 11498 mRNA_3130 0.61 -0.8
389,985 + 11498 mRNA_3130 0.65 +0.9
390,138 + 11498 mRNA_3130 0.69 -0.4
390,270 - 11498 mRNA_3130 0.73 -0.6
390,376 + 11498 mRNA_3130 0.75 +1.3
390,417 + 11498 mRNA_3130 0.76 -0.4
390,538 + 11498 mRNA_3130 0.80 -0.9
390,549 - 11498 mRNA_3130 0.80 +0.9
390,703 - 11498 mRNA_3130 0.84 -1.7
390,706 + 11498 mRNA_3130 0.84 +1.1
390,719 + 11498 mRNA_3130 0.84 +2.2
390,721 + 11498 mRNA_3130 0.84 +0.9
390,854 - 11498 mRNA_3130 0.88 +3.0
390,896 - 11498 mRNA_3130 0.89 +2.2
391,116 - -0.9
391,132 + +0.1
391,152 - +0.3
391,305 + -0.7
391,309 + -0.2
391,424 - +0.4
391,585 + +1.0
391,588 + -2.2
391,622 - -1.1
392,104 - 11499 mRNA_3131 0.15 +1.0
392,295 - 11499 mRNA_3131 0.21 +0.9
392,303 + 11499 mRNA_3131 0.21 -1.9
392,319 - 11499 mRNA_3131 0.22 +0.6
392,331 - 11499 mRNA_3131 0.22 -2.3

Or see this region's nucleotide sequence