Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3138

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11505 and 11506 are separated by 199 nucleotides11506 and 11507 are separated by 240 nucleotides mRNA_3137: 11505 - SUPERFAMILY--SSF48208, at 407,732 to 408,630 11505 mRNA_3138: 11506 - K13106 BUD13, CWC26 pre-mRNA-splicing factor CWC26, at 408,830 to 410,030 11506 mRNA_3139: 11507 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 410,271 to 410,837 11507

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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407,871 + 11505 mRNA_3137 0.15 +0.2
407,875 - 11505 mRNA_3137 0.16 +1.3
407,932 + 11505 mRNA_3137 0.22 +1.4
408,220 - 11505 mRNA_3137 0.54 +0.8
408,266 + 11505 mRNA_3137 0.59 -0.7
408,267 - 11505 mRNA_3137 0.60 -1.8
408,311 - 11505 mRNA_3137 0.64 -1.1
408,357 - 11505 mRNA_3137 0.70 +1.7
408,510 - 11505 mRNA_3137 0.87 -0.2
408,556 + -0.6
408,566 + -1.6
408,638 - +0.3
408,652 - +1.5
408,665 + -0.8
408,669 - -0.7
408,669 - +0.5
408,673 - +0.0
408,676 - +0.1
408,681 - -1.1
408,782 + -0.3
408,813 - -0.6
408,948 + +0.7
408,962 - 11506 mRNA_3138 0.11 -1.1
408,971 + 11506 mRNA_3138 0.12 +0.0
408,971 - 11506 mRNA_3138 0.12 +0.2
408,976 - 11506 mRNA_3138 0.12 -0.1
409,061 - 11506 mRNA_3138 0.19 -1.5
409,081 - 11506 mRNA_3138 0.21 +0.4
409,105 - 11506 mRNA_3138 0.23 -0.1
409,107 + 11506 mRNA_3138 0.23 -0.1
409,109 - 11506 mRNA_3138 0.23 +1.4
409,134 + 11506 mRNA_3138 0.25 -1.5
409,418 + 11506 mRNA_3138 0.49 +0.5
409,533 - 11506 mRNA_3138 0.59 -0.1
409,674 - 11506 mRNA_3138 0.70 -0.5
409,714 - 11506 mRNA_3138 0.74 -0.5
409,887 + 11506 mRNA_3138 0.88 +0.8
409,919 + +1.1
409,981 + +1.2
409,982 - -0.9
410,015 - +0.3
410,053 - +1.2
410,116 + -3.1
410,149 + -0.8
410,325 + -0.4
410,342 + 11507 mRNA_3139 0.13 +1.4
410,423 - 11507 mRNA_3139 0.27 +0.7
410,460 + 11507 mRNA_3139 0.33 -0.2
410,477 - 11507 mRNA_3139 0.36 +0.1
410,560 + 11507 mRNA_3139 0.51 -0.3
410,576 + 11507 mRNA_3139 0.54 +1.2
410,576 + 11507 mRNA_3139 0.54 +0.9
410,587 + 11507 mRNA_3139 0.56 -1.7
410,593 + 11507 mRNA_3139 0.57 -0.0
410,644 - 11507 mRNA_3139 0.66 -0.6
410,720 + 11507 mRNA_3139 0.79 -0.4
410,758 - 11507 mRNA_3139 0.86 +1.3
410,795 + +0.8
410,798 - -1.0
410,855 + -1.0
410,860 - -0.9
410,866 - +0.0
410,927 + -0.1
410,955 - -0.6
410,963 - +0.5
410,978 - -0.5
410,998 + +0.2
411,007 + +1.2
411,012 - +2.6
411,019 + +0.5
411,021 + +0.4
411,021 + -0.1

Or see this region's nucleotide sequence