Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3154

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11521 and 11522 are separated by 295 nucleotides mRNA_3153: 11521 - BLAST serine proline rich protein [Moniliophthora rorer..., at 439,382 to 440,661 11521 mRNA_3154: 11522 - K14831 MAK16 protein MAK16, at 440,957 to 442,475 11522

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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440,096 + 11521 mRNA_3153 0.56 -0.9
440,332 - 11521 mRNA_3153 0.74 +0.3
440,340 + 11521 mRNA_3153 0.75 -0.3
440,495 - 11521 mRNA_3153 0.87 -1.4
440,508 + 11521 mRNA_3153 0.88 +0.6
440,639 - +0.7
440,692 + -1.6
440,928 - -1.2
440,945 - +1.3
440,973 - +0.2
441,230 - 11522 mRNA_3154 0.18 +0.9
441,364 + 11522 mRNA_3154 0.27 -1.7
441,385 + 11522 mRNA_3154 0.28 -0.0
441,487 - 11522 mRNA_3154 0.35 +0.6
441,546 - 11522 mRNA_3154 0.39 +0.2
441,926 - 11522 mRNA_3154 0.64 +2.0
441,980 + 11522 mRNA_3154 0.67 +2.8
442,193 - 11522 mRNA_3154 0.81 +0.2
442,202 + 11522 mRNA_3154 0.82 +0.0
442,229 + 11522 mRNA_3154 0.84 +0.2
442,370 - +1.1
442,376 - +0.2
442,521 - +0.1
442,527 + -0.3
442,528 + -2.0
442,543 + -0.3
442,567 + +0.2
442,665 - +0.7
442,665 - +0.6
442,666 + +1.4
442,667 + -0.1
442,667 + +0.4
442,670 + +0.6
442,671 - +2.1
442,674 - -0.2
442,676 - -0.1
442,681 + +1.1
442,689 - +1.3
442,692 - -0.3
442,693 + -3.2
442,695 + +0.4
442,711 + -0.3
442,729 + +0.3
442,807 + +0.2
442,808 + +1.4
442,843 - -1.3
442,850 - -1.1
442,919 - -2.6
442,963 + +0.1
442,970 + -0.4
442,984 - -2.0
442,984 - +0.3
442,995 - -0.4
442,997 - -0.8
442,997 - -0.4
443,002 + -0.2
443,003 - +1.3
443,011 - -0.7
443,015 + -0.1
443,022 + +0.5
443,026 - -2.9
443,030 + -2.6
443,033 - +0.3
443,049 + -2.3
443,051 - -0.3
443,052 - +0.0
443,052 - -0.2
443,054 - -0.1
443,055 + +0.0
443,058 - +1.9
443,058 + +0.1
443,058 + -0.2
443,062 + -0.7
443,064 + -1.6
443,069 - +1.0
443,069 - -1.8
443,073 - +1.7
443,073 - -1.6
443,078 - +0.5
443,083 - -0.5
443,087 - -0.1
443,090 + -1.1
443,090 + +0.0
443,092 - -1.4
443,096 - -0.9
443,096 - -0.8
443,097 + +2.0
443,099 + -2.8
443,102 - -0.2
443,105 + +0.6
443,106 - +0.7
443,108 - -0.4
443,109 + +0.4
443,109 + +1.3
443,112 - -0.2
443,112 - +1.0
443,113 - +0.0
443,114 - +0.8
443,115 - -0.6
443,118 - -0.4
443,120 - +0.4
443,121 + +0.1
443,123 - -0.8
443,125 - +1.0
443,126 - -0.2
443,128 - +1.8
443,129 - +0.3
443,130 + +0.4
443,131 + -0.9
443,135 + -0.1
443,135 - -0.3
443,135 + -0.0
443,136 + -0.5
443,136 - -1.0
443,136 + -1.4
443,138 + +0.4
443,138 - -1.0
443,139 + -1.2
443,143 - -0.7
443,143 + +2.0
443,145 - -0.2
443,150 + -0.4
443,166 + -1.8
443,195 - +0.3
443,200 + -0.7
443,201 + -0.3
443,203 - -2.2
443,206 - +0.6
443,211 - -2.0
443,211 - +0.2
443,211 + +1.1
443,214 + +0.3
443,215 - -1.0
443,220 - +1.7
443,222 - -2.1
443,222 + +0.0
443,222 - -0.3
443,222 + +0.2
443,223 - -2.5
443,228 - +0.0
443,233 - -1.0
443,236 - -0.7
443,236 - -1.5
443,238 + -0.8
443,238 - -1.2
443,240 + -0.1
443,241 + +0.4
443,242 + -0.2
443,245 - +0.1
443,245 - -0.3
443,246 + -0.1
443,247 + +0.7
443,248 + +0.1
443,249 + -0.5
443,251 + +0.5
443,253 + -1.1
443,257 + -0.3
443,257 + -0.5
443,257 + +0.8
443,262 - -0.7
443,264 - -2.7
443,264 + +0.2
443,266 - -0.7
443,268 + -0.6
443,268 + +0.2
443,273 + +0.9
443,282 - +1.2
443,283 + -0.1
443,289 + +0.1
443,297 + +0.7
443,300 - -0.1
443,300 - -2.0
443,367 - -1.0
443,379 + -0.6
443,397 + -0.6
443,408 + -1.2
443,409 + +0.1
443,411 - -1.2
443,414 + +0.2
443,415 - -2.0
443,416 + +0.0
443,416 - +0.3
443,418 + -0.2
443,420 - -0.6
443,420 - -0.6
443,424 - +2.2
443,428 - -2.8
443,430 - -1.0
443,430 - -1.9
443,430 + -0.6
443,436 + +0.4
443,436 + -0.5
443,439 + -0.8
443,470 + -1.0

Or see this region's nucleotide sequence