Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3155

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11523 and 11524 are separated by 619 nucleotides mRNA_3155: 11523 - HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550, at 443,800 to 447,457 11523 mRNA_3156: 11524 - K12662 PRPF4, PRP4 U4/U6 small nuclear ribonucleoprotein PRP4, at 448,077 to 450,028 11524

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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442,807 + +0.2
442,808 + +1.4
442,843 - -1.3
442,850 - -1.1
442,919 - -2.6
442,963 + +0.1
442,970 + -0.4
442,984 - -2.0
442,984 - +0.3
442,995 - -0.4
442,997 - -0.8
442,997 - -0.4
443,002 + -0.2
443,003 - +1.3
443,011 - -0.7
443,015 + -0.1
443,022 + +0.5
443,026 - -2.9
443,030 + -2.6
443,033 - +0.3
443,049 + -2.3
443,051 - -0.3
443,052 - +0.0
443,052 - -0.2
443,054 - -0.1
443,055 + +0.0
443,058 - +1.9
443,058 + +0.1
443,058 + -0.2
443,062 + -0.7
443,064 + -1.6
443,069 - +1.0
443,069 - -1.8
443,073 - +1.7
443,073 - -1.6
443,078 - +0.5
443,083 - -0.5
443,087 - -0.1
443,090 + -1.1
443,090 + +0.0
443,092 - -1.4
443,096 - -0.9
443,096 - -0.8
443,097 + +2.0
443,099 + -2.8
443,102 - -0.2
443,105 + +0.6
443,106 - +0.7
443,108 - -0.4
443,109 + +0.4
443,109 + +1.3
443,112 - -0.2
443,112 - +1.0
443,113 - +0.0
443,114 - +0.8
443,115 - -0.6
443,118 - -0.4
443,120 - +0.4
443,121 + +0.1
443,123 - -0.8
443,125 - +1.0
443,126 - -0.2
443,128 - +1.8
443,129 - +0.3
443,130 + +0.4
443,131 + -0.9
443,135 + -0.1
443,135 - -0.3
443,135 + -0.0
443,136 + -0.5
443,136 - -1.0
443,136 + -1.4
443,138 + +0.4
443,138 - -1.0
443,139 + -1.2
443,143 - -0.7
443,143 + +2.0
443,145 - -0.2
443,150 + -0.4
443,166 + -1.8
443,195 - +0.3
443,200 + -0.7
443,201 + -0.3
443,203 - -2.2
443,206 - +0.6
443,211 - -2.0
443,211 - +0.2
443,211 + +1.1
443,214 + +0.3
443,215 - -1.0
443,220 - +1.7
443,222 - -2.1
443,222 + +0.0
443,222 - -0.3
443,222 + +0.2
443,223 - -2.5
443,228 - +0.0
443,233 - -1.0
443,236 - -0.7
443,236 - -1.5
443,238 + -0.8
443,238 - -1.2
443,240 + -0.1
443,241 + +0.4
443,242 + -0.2
443,245 - +0.1
443,245 - -0.3
443,246 + -0.1
443,247 + +0.7
443,248 + +0.1
443,249 + -0.5
443,251 + +0.5
443,253 + -1.1
443,257 + -0.3
443,257 + -0.5
443,257 + +0.8
443,262 - -0.7
443,264 - -2.7
443,264 + +0.2
443,266 - -0.7
443,268 + -0.6
443,268 + +0.2
443,273 + +0.9
443,282 - +1.2
443,283 + -0.1
443,289 + +0.1
443,297 + +0.7
443,300 - -0.1
443,300 - -2.0
443,367 - -1.0
443,379 + -0.6
443,397 + -0.6
443,408 + -1.2
443,409 + +0.1
443,411 - -1.2
443,414 + +0.2
443,415 - -2.0
443,416 + +0.0
443,416 - +0.3
443,418 + -0.2
443,420 - -0.6
443,420 - -0.6
443,424 - +2.2
443,428 - -2.8
443,430 - -1.0
443,430 - -1.9
443,430 + -0.6
443,436 + +0.4
443,436 + -0.5
443,439 + -0.8
443,470 + -1.0
443,559 - -2.8
443,573 - -0.8
443,574 - -0.0
443,574 + -1.8
443,575 + -0.1
443,588 - -0.1
443,592 + +1.5
443,593 + +0.4
443,594 - -0.2
443,594 + +0.2
443,599 + +0.4
443,718 - -0.5
443,718 - +0.6
443,728 - +0.6
443,729 + -0.1
443,733 - +0.8
443,734 + +0.9
443,735 + +1.1
443,739 + -1.8
443,745 + +1.2
443,749 - +1.3
443,750 + +1.0
443,755 + +0.4
443,755 + -0.1
443,760 - -0.9
443,760 - +1.8
443,775 + -1.7
443,881 + +1.0
443,883 + -0.8
443,883 + +0.7
443,883 + -0.1
443,889 - +0.9
443,893 + -0.3
443,895 + +0.3
443,897 + +0.0
443,901 - -2.3
443,901 + -1.6
443,902 + -0.7
443,904 + +0.8
443,910 + -0.2
443,918 - -0.1
444,074 + +0.2
444,168 + 11523 mRNA_3155 0.10 +1.3
444,170 - 11523 mRNA_3155 0.10 +0.4
444,175 - 11523 mRNA_3155 0.10 -0.2
444,176 + 11523 mRNA_3155 0.10 +1.4
444,198 + 11523 mRNA_3155 0.11 +1.1
444,473 + 11523 mRNA_3155 0.18 +0.0
444,480 + 11523 mRNA_3155 0.19 +0.3
444,564 + 11523 mRNA_3155 0.21 -0.2
444,767 + 11523 mRNA_3155 0.26 +0.1
445,122 + 11523 mRNA_3155 0.36 +2.2
445,173 + 11523 mRNA_3155 0.38 +0.9
445,364 + 11523 mRNA_3155 0.43 -0.1
445,402 + 11523 mRNA_3155 0.44 +2.2
445,493 + 11523 mRNA_3155 0.46 +0.6
445,539 + 11523 mRNA_3155 0.48 +1.1
445,624 + 11523 mRNA_3155 0.50 -1.2
445,649 + 11523 mRNA_3155 0.51 +0.4
445,725 - 11523 mRNA_3155 0.53 -0.9
445,767 - 11523 mRNA_3155 0.54 +0.3
445,799 - 11523 mRNA_3155 0.55 +2.2
445,948 + 11523 mRNA_3155 0.59 -0.8
446,124 + 11523 mRNA_3155 0.64 +0.3
446,403 + 11523 mRNA_3155 0.71 -1.2
446,482 + 11523 mRNA_3155 0.73 -0.5
446,954 - 11523 mRNA_3155 0.86 +2.5
446,962 - 11523 mRNA_3155 0.86 -0.5
447,082 - 11523 mRNA_3155 0.90 +0.8
447,257 - +0.1
447,543 + -0.1
447,554 - +0.9
447,555 + +0.6
447,558 + +3.0
447,679 - +0.9
447,838 + +0.4
447,846 - +1.6
447,850 - -1.4
447,854 - +0.3
448,004 + +1.1
448,019 - -0.1
448,140 + +0.6
448,146 - -0.2
448,162 + +0.0
448,165 + -0.4
448,175 + +1.4
448,230 + +1.0
448,286 - 11524 mRNA_3156 0.11 -1.1
448,303 - 11524 mRNA_3156 0.12 +1.5
448,308 - 11524 mRNA_3156 0.12 +0.1
448,436 + 11524 mRNA_3156 0.18 -0.4

Or see this region's nucleotide sequence