Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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12 + +1.3
12 + -1.0
15 + +0.9
16 + +1.5
18 + +0.5
22 + -0.8
25 + +0.2
57 - -1.8
61 - -0.0
62 + -0.2
62 + +0.8
66 + -1.0
72 + +0.1
72 + -1.6
72 + -1.3
75 + +0.7
78 - -1.0
105 + +0.6
110 - -2.0
114 + +0.1
115 + -1.6
118 + +0.3
122 + +0.2
122 - +1.2
124 + +0.4
135 + +1.3
147 + -0.6
157 + +1.5
161 + +0.6
168 + -3.2
174 + +0.7
177 - +0.4
228 + -2.4
247 + +1.5
252 - -0.5
253 - +0.5
255 + -0.0
258 + +0.2
264 - -0.1
269 + -0.5
269 - +0.2
274 + +0.6
275 - +0.0
277 + -0.1
280 + -1.4
280 + -0.0
283 - +0.1
285 - +0.2
287 + -0.4
287 + +1.2
288 + +0.1
292 - +0.3
293 + -0.1
298 + -0.9
305 - +0.0
314 + -1.5
320 + -1.6
368 + +0.1
370 - +0.6
372 + -1.7
382 + -0.2
384 + +0.7
391 + -0.2
391 - -2.1
397 + +1.5
397 - +0.9
402 + +0.2
405 + +0.5
423 - -0.5
430 + +1.1
440 + -0.3
446 + -0.1
470 + +0.3
524 + -0.9
532 + -0.4
545 - +2.2
557 + +1.3
569 + +1.7
570 - +0.5
583 + +0.2
584 + +1.5
603 - +0.2
603 + +0.2
634 - 11537 mRNA_3169 0.11 +0.0
636 + 11537 mRNA_3169 0.11 -0.3
646 + 11537 mRNA_3169 0.12 +1.1
661 + 11537 mRNA_3169 0.13 -0.5
667 + 11537 mRNA_3169 0.14 -1.3
698 + 11537 mRNA_3169 0.17 -0.2
704 - 11537 mRNA_3169 0.18 -0.4
705 - 11537 mRNA_3169 0.18 +1.8
721 - 11537 mRNA_3169 0.19 -0.8
725 + 11537 mRNA_3169 0.20 +1.5
738 - 11537 mRNA_3169 0.21 +1.1
849 + 11537 mRNA_3169 0.32 +0.6
871 + 11537 mRNA_3169 0.34 -1.5
883 + 11537 mRNA_3169 0.35 +1.4
894 + 11537 mRNA_3169 0.37 -0.1
895 + 11537 mRNA_3169 0.37 -0.2
922 + 11537 mRNA_3169 0.39 +0.2
965 - 11537 mRNA_3169 0.44 -0.4
1,012 - 11537 mRNA_3169 0.48 -0.1
1,026 + 11537 mRNA_3169 0.50 -1.0
1,026 + 11537 mRNA_3169 0.50 +1.2
1,105 + 11537 mRNA_3169 0.58 -0.8
1,123 + 11537 mRNA_3169 0.60 -0.0
1,141 + 11537 mRNA_3169 0.61 -0.2
1,142 + 11537 mRNA_3169 0.61 +1.8
1,165 + 11537 mRNA_3169 0.64 +0.5
1,174 - 11537 mRNA_3169 0.65 -1.2
1,174 + 11537 mRNA_3169 0.65 -1.1
1,259 + 11537 mRNA_3169 0.73 +1.5
1,265 + 11537 mRNA_3169 0.74 +0.7
1,268 + 11537 mRNA_3169 0.74 +1.3
1,269 - 11537 mRNA_3169 0.74 -0.8
1,288 - 11537 mRNA_3169 0.76 -1.5
1,297 + 11537 mRNA_3169 0.77 -1.2
1,303 - 11537 mRNA_3169 0.78 +0.8
1,399 + 11537 mRNA_3169 0.87 -2.4
1,412 - 11537 mRNA_3169 0.88 -1.1
1,419 - 11537 mRNA_3169 0.89 +0.6
1,423 - 11537 mRNA_3169 0.90 -3.2
1,429 - +0.8
1,453 + +0.4
1,459 + +0.8
1,459 + +0.0
1,460 - -0.7
1,461 + -0.8
1,462 + +0.6
1,467 + +1.1
1,470 - -3.4
1,474 - -0.1
1,485 + +0.7
1,520 + -1.4
1,523 + +1.0
1,531 - +0.7
1,537 + -0.3
1,541 + +1.3
1,562 + +0.8
1,567 + +1.1
1,572 + -2.4
1,582 - +0.9
1,584 - -0.7
1,589 + -1.1
1,596 - -0.2
1,601 - -2.0
1,602 + -1.4
1,605 + +0.7
1,609 + +0.8
1,616 + -3.3
1,636 + +1.0
1,654 + +0.8
1,656 - +1.5
1,666 + -0.6
1,675 - +0.5
1,682 - -1.0
1,697 - +0.1
1,709 + -2.0
1,709 - +0.2
1,711 + -0.6
1,718 - +1.4
1,719 + -0.8
1,722 - +0.2
1,723 + +0.3
1,725 - +0.7
1,725 - +0.9
1,727 + -2.4
1,730 + -0.3
1,731 + +0.8
1,732 + +2.8
1,732 + +0.5
1,734 + -2.4
1,734 + -0.5
1,734 + +0.4
1,739 - -1.0
1,740 + +0.8
1,744 - +1.4
1,747 + +0.4
1,749 + -1.7
1,759 + +0.3
1,759 + +0.0
1,759 + +1.5
1,761 + -0.6
1,763 + -2.7
1,765 + +0.9
1,767 + +1.6
1,769 + +0.2
1,772 + -0.4
1,772 + -0.7
1,774 + -1.0
1,774 + -0.7
1,775 + +0.4
1,776 - +2.1
1,776 + +0.7
1,777 + +1.0
1,778 + +2.1
1,778 - -0.5
1,781 - +1.9
1,783 - -0.8
1,783 - -0.8
1,783 - +2.0
1,783 - -1.6
1,784 + -0.7
1,789 + +2.0
1,789 - +0.0
1,791 + -0.1
1,792 + -2.9
1,793 + +1.4
1,795 + +0.1
1,796 + -1.6
1,796 - +1.0
1,798 + +1.4
1,800 + -1.4
1,801 + +0.1
1,805 + -0.3
1,805 + +0.1
1,807 + +0.4
1,813 - +0.4
1,814 + +0.3
1,814 + +0.5
1,818 - +1.0
1,851 - +1.0
1,874 + -0.3
1,881 - +1.2
1,885 - -0.1
1,891 - -2.3
1,896 - -0.8
1,912 + +0.6
1,912 + +0.4
1,914 - -1.0
1,916 - -0.1
1,917 - +1.2
1,919 + -1.3
1,922 - +1.4
1,923 - +1.0
1,934 - +1.3
1,935 + -0.7
1,938 - -1.1
1,938 - -0.7
1,940 - -0.2
1,941 + -0.8
1,941 + -0.5
1,942 + +0.2
1,943 - -2.4
1,944 + +0.4
1,944 - +0.3
1,945 - +0.8
1,945 + +0.2
1,946 - -0.5
1,947 + +0.6
1,960 - +0.4
1,968 + +0.1
1,980 + +2.1
2,015 + -1.3
2,067 - +0.3
2,081 - -0.2
2,091 + +0.5
2,220 + -0.2
2,229 - +0.9
2,235 - +0.1
2,237 - +0.5
2,242 + -1.4
2,242 - +0.1
2,245 - +1.6
2,248 - -2.8
2,251 + +0.7
2,254 - -0.2
2,261 + -0.1
2,262 - -0.5
2,266 + +2.8
2,268 + -1.5
2,400 + 11538 mRNA_3170 0.21 -1.1
2,401 - 11538 mRNA_3170 0.21 -0.9
2,404 + 11538 mRNA_3170 0.22 -2.2
2,414 + 11538 mRNA_3170 0.23 +0.6
2,420 - 11538 mRNA_3170 0.23 +1.6
2,439 + 11538 mRNA_3170 0.25 +0.8
2,446 + 11538 mRNA_3170 0.26 +2.2
2,470 - 11538 mRNA_3170 0.28 +1.2
2,516 - 11538 mRNA_3170 0.32 -1.9

Or see this region's nucleotide sequence