Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3245

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11612 and 11613 are separated by 459 nucleotides mRNA_3244: 11612 - Hypothetical Protein, at 199,306 to 200,606 11612 mRNA_3245: 11613 - HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550,HMMPfam-Protein of unknown function (DUF3295)-PF11702, at 201,066 to 204,037 11613

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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200,108 + 11612 mRNA_3244 0.62 -1.4
200,206 + 11612 mRNA_3244 0.69 +2.7
200,479 + +0.2
200,500 - -0.4
200,515 - -0.9
200,553 - -0.5
200,597 + +0.1
201,006 - -0.9
201,130 - -0.4
202,039 + 11613 mRNA_3245 0.33 -0.3
202,325 + 11613 mRNA_3245 0.42 +0.0
202,630 + 11613 mRNA_3245 0.53 +0.1
202,767 - 11613 mRNA_3245 0.57 -0.5
203,376 - 11613 mRNA_3245 0.78 +1.5
203,509 + 11613 mRNA_3245 0.82 +1.3
203,657 - 11613 mRNA_3245 0.87 -0.3
203,661 + 11613 mRNA_3245 0.87 +0.1
203,790 - -0.3
203,799 - -0.3
203,946 + -1.3
203,947 + +0.5
204,103 - +0.1
204,225 - -1.2
204,225 - -2.2
204,225 - -1.2
204,234 - -0.2
204,235 - -0.9
204,238 + -1.8
204,250 - -2.2
204,251 + +0.0
204,270 + +0.0
204,278 + -0.4
204,280 + -2.7
204,286 - -0.7
204,290 - -1.6
204,291 - -0.6
204,298 + -0.0
204,314 + +1.5
204,335 - +0.5
204,357 - +0.1
204,383 - +0.1
204,393 - +1.3
204,412 + -1.3
204,437 - -1.0
204,443 - +2.4
204,445 + -0.5
204,447 - +0.5
204,448 + -1.6
204,448 - +0.4
204,454 + -1.1
204,454 + -1.0
204,455 - +2.3
204,463 + -0.6
204,468 - -0.7
204,473 + +1.6
204,479 + +0.0
204,484 - +1.2
204,491 - +0.0
204,511 - -0.8
204,528 - -0.3
204,534 - -2.7
204,547 - +0.7
204,557 + +0.8
204,639 + -2.2
204,647 + -1.4
204,652 - -1.2
204,654 + -1.1
204,664 - -0.3
204,665 + +0.7
204,678 + -1.9
204,695 + +1.8
204,699 + -0.0
204,724 - +2.4
204,727 + -1.4
204,801 - +0.2
204,811 + -0.0
204,826 + -1.0
204,957 - -0.8

Or see this region's nucleotide sequence