Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3348

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11715 and 11716 are separated by 624 nucleotides11716 and 11717 are separated by 645 nucleotides mRNA_3347: 11715 - PRINTS-Proline rich extensin signature-PR01217, at 444,755 to 446,622 11715 mRNA_3348: 11716 - K09831 ERG5, CYP61A sterol 22-desaturase, at 447,247 to 449,563 11716 mRNA_3349: 11717 - K13179 DDX18, HAS1 ATP-dependent RNA helicase DDX18/HAS1, at 450,209 to 452,145 11717

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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446,855 + -0.9
448,691 + 11716 mRNA_3348 0.62 +0.6
448,817 + 11716 mRNA_3348 0.68 -1.0
449,457 - -0.4
449,580 - -0.9
449,587 - +0.5
449,595 - -0.6
449,614 - -0.5
449,614 - -0.6
449,617 + -2.2
449,635 - -0.9
449,640 + +2.9
449,642 + +1.1
449,643 - -0.9
449,644 + +1.2
449,646 - +2.1
449,649 + -1.3
449,651 + +0.8
449,653 + +0.6
449,789 - -1.2
449,795 - -0.3
449,942 - -0.2
450,059 - +1.6
450,079 - -1.3
450,095 + -1.5

Or see this region's nucleotide sequence