Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3353

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11720 and 11721 are separated by 294 nucleotides11721 and 11722 are separated by 214 nucleotides mRNA_3352: 11720 - K06699 PSME4 proteasome activator subunit 4, at 464,153 to 471,579 11720 mRNA_3353: 11721 - K10352 MYH myosin heavy chain, at 471,874 to 478,185 11721 mRNA_3354: 11722 - KOG2395 Protein involved in vacuole import and degradation, at 478,400 to 482,104 11722

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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471,049 + +0.0
471,049 + +0.8
471,346 + -1.0
471,462 + +0.8
471,477 + +0.8
471,570 - +1.6
471,605 + -0.3
471,625 - +0.3
471,747 - -0.4
472,059 + +0.4
475,498 - 11721 mRNA_3353 0.57 -2.5
477,527 - 11721 mRNA_3353 0.90 +1.6
477,644 - -2.5
478,211 - -0.4
478,226 + +0.4
478,228 - -0.1
478,233 + -0.1
478,369 + -0.6
478,784 + 11722 mRNA_3354 0.10 -0.0

Or see this region's nucleotide sequence