Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3369

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11736 and 11737 are separated by 610 nucleotides11737 and 11738 are separated by 650 nucleotides mRNA_3368: 11736 - Hypothetical Protein, at 508,534 to 511,308 11736 mRNA_3369: 11737 - KOG2659 LisH motif-containing protein, at 511,919 to 513,281 11737 mRNA_3370: 11738 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 513,932 to 515,418 11738

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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510,988 - 11736 mRNA_3368 0.88 -0.2
511,063 - +0.1
511,071 + -0.4
511,156 + -0.2
511,260 - -1.9
511,277 - -0.3
511,298 - -0.1
511,299 - -0.0
511,303 - -0.9
511,312 + -1.5
511,320 + -0.7
511,328 + +0.8
511,340 - +1.0
511,385 + -1.3
511,400 - -0.4
511,414 - +0.9
511,429 - +0.5
511,429 - +1.5
511,454 + -1.5
511,459 + +0.9
511,477 + -0.8
511,563 + +0.4
511,604 + +1.0
511,634 + +1.1
511,644 - -0.5
511,739 - +1.7
511,782 + +1.7
511,796 - +1.0
511,885 + -0.1
511,933 - +1.9
512,243 - 11737 mRNA_3369 0.24 +1.7
512,483 + 11737 mRNA_3369 0.41 -0.4
512,642 - 11737 mRNA_3369 0.53 -2.2
512,826 + 11737 mRNA_3369 0.67 -2.0
512,896 + 11737 mRNA_3369 0.72 -0.2
513,086 - 11737 mRNA_3369 0.86 +0.2
513,095 + 11737 mRNA_3369 0.86 -0.1
513,120 + 11737 mRNA_3369 0.88 +0.1
513,270 + +0.4
513,338 - -1.1
513,349 + -2.7
513,375 - -2.0
513,379 + +0.2
513,384 - +0.1
513,386 + -0.8
513,402 - +0.9
513,529 + +0.3
513,541 + +0.3
513,640 - +0.5
513,691 + -2.0
513,838 - -0.5
513,848 + -0.1
513,934 - -0.6
513,960 - +0.2
514,002 - +1.0
514,012 + -1.1
514,104 - 11738 mRNA_3370 0.12 +0.7
514,110 + 11738 mRNA_3370 0.12 +1.4
514,112 - 11738 mRNA_3370 0.12 +0.8
514,116 + 11738 mRNA_3370 0.12 +0.9
514,118 - 11738 mRNA_3370 0.13 +0.9
514,256 + 11738 mRNA_3370 0.22 -0.1
514,277 - 11738 mRNA_3370 0.23 -0.8

Or see this region's nucleotide sequence