Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3567

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11934 and 11935 are separated by 567 nucleotides11935 and 11936 are separated by 180 nucleotides mRNA_3566: 11934 - HMMPfam-Opioid growth factor receptor (OGFr) conserved region-PF04664, at 68,325 to 69,478 11934 mRNA_3567: 11935 - KOG1760 Molecular chaperone Prefoldin, subunit 4, at 70,046 to 70,788 11935 mRNA_3568: 11936 - KOG4055 Uncharacterized conserved protein, at 70,969 to 72,030 11936

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
69,236 + 11934 mRNA_3566 0.79 +2.6
69,406 - -0.3
69,416 + -0.9
69,522 - -0.3
69,532 + +0.4
69,728 + +1.0
69,827 - +1.3
70,829 - +1.1
70,862 - +2.3
70,974 + -1.5

Or see this region's nucleotide sequence