Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3591

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11958 and 11959 are separated by 272 nucleotides11959 and 11960 are separated by 406 nucleotides mRNA_3590: 11958 - K02136 ATPeF1G, ATP5C1, ATP3 F-type H+-transporting ATPase subunit gamma, at 118,835 to 120,315 11958 mRNA_3591: 11959 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 120,588 to 122,766 11959 mRNA_3592: 11960 - KOG2664 Small nuclear RNA activating protein complex - 50kD subunit (SNAP50), at 123,173 to 125,228 11960

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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120,792 - +0.4
120,857 - 11959 mRNA_3591 0.12 +0.4
120,916 - 11959 mRNA_3591 0.15 -1.1
120,926 + 11959 mRNA_3591 0.16 -0.9
120,936 - 11959 mRNA_3591 0.16 -1.2
121,029 + 11959 mRNA_3591 0.20 -0.4
121,378 + 11959 mRNA_3591 0.36 +0.6
122,035 - 11959 mRNA_3591 0.66 -0.9
122,118 + 11959 mRNA_3591 0.70 -0.2
122,350 + 11959 mRNA_3591 0.81 +2.0
122,370 + 11959 mRNA_3591 0.82 -0.3
122,650 - -0.2
122,657 + -0.2
122,703 - -1.2
122,815 - -0.6
122,815 - +0.5
123,089 + -0.9

Or see this region's nucleotide sequence