Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3599

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11966 and 11967 are separated by 217 nucleotides11967 and 11968 are separated by 612 nucleotides mRNA_3598: 11966 - KOG2652 RNA polymerase II transcription initiation factor TFIIA, large chain, at 137,259 to 138,295 11966 mRNA_3599: 11967 - K02134 ATPeF1D, ATP5D, ATP16 F-type H+-transporting ATPase subunit delta, at 138,513 to 139,861 11967 mRNA_3600: 11968 - HMMPfam-PWWP domain-PF00855,ProSiteProfiles-PWWP domain profile.-PS50812,SMART-domain with conserved PWWP motif-SM00293,SUPERFAMILY--SSF63748, at 140,474 to 142,309 11968

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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138,385 - -0.4
138,388 + -1.2
138,415 + +0.2
138,441 - +0.4
138,445 + -0.8
138,446 + -0.5
138,449 + -1.7
138,450 - -0.7
138,451 + -0.5
138,454 - -0.2
138,457 - +0.1
138,465 - +1.2
138,465 + -0.1
138,471 + +0.2
138,473 + +0.7
138,476 + -0.4
138,477 + +1.2
140,086 + -0.7
140,121 - +0.3
140,123 + +0.3
140,144 + -0.1
140,254 - +0.8
140,255 + -2.2
140,259 + +1.0
140,262 + -1.9
140,263 - -0.3
140,265 + +0.3
140,265 - +0.3
140,266 + -0.3
140,274 + -0.5
140,276 + +1.8
140,709 - 11968 mRNA_3600 0.13 +0.8

Or see this region's nucleotide sequence