Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3641

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12008 and 12009 are separated by 33 nucleotides12009 and 12010 are separated by 264 nucleotides mRNA_3640: 12008 - ProSiteProfiles-Zinc finger SWIM-type profile.-PS50966, at 229,768 to 230,624 12008 mRNA_3641: 12009 - K17615 PPG1 serine/threonine-protein phosphatase PPG1, at 230,658 to 231,997 12009 mRNA_3642: 12010 - K08818 CDC2L cell division cycle 2-like, at 232,262 to 233,977 12010

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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229,750 - +0.7
229,868 + 12008 mRNA_3640 0.12 +1.1
229,870 - 12008 mRNA_3640 0.12 +1.9
229,872 - 12008 mRNA_3640 0.12 +0.4
230,158 - 12008 mRNA_3640 0.46 -0.4
230,176 + 12008 mRNA_3640 0.48 -3.4
230,185 - 12008 mRNA_3640 0.49 -0.1
230,218 - 12008 mRNA_3640 0.53 -0.0
230,302 + 12008 mRNA_3640 0.62 -0.2
230,308 + 12008 mRNA_3640 0.63 -0.0
230,474 + 12008 mRNA_3640 0.82 +0.4
230,495 + 12008 mRNA_3640 0.85 +1.2
230,587 + -0.2
230,605 + +1.9
230,630 + +0.7
230,658 - +0.0
230,915 + 12009 mRNA_3641 0.19 -1.9
231,185 + 12009 mRNA_3641 0.39 +3.2
232,059 + +0.9
232,088 + -1.7
232,127 + +0.2
232,146 - -0.4
232,204 + -0.6
232,228 - +1.4

Or see this region's nucleotide sequence