Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3656

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12023 and 12024 are separated by 30 nucleotides12024 and 12025 are separated by 161 nucleotides mRNA_3655: 12023 - KOG1721 FOG Zn-finger, at 271,428 to 272,912 12023 mRNA_3656: 12024 - Hypothetical Protein, at 272,943 to 273,266 12024 mRNA_3657: 12025 - Hypothetical Protein, at 273,428 to 273,670 12025

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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272,009 - 12023 mRNA_3655 0.39 -0.2
272,262 - 12023 mRNA_3655 0.56 -1.0
272,438 - 12023 mRNA_3655 0.68 +1.1
272,484 + 12023 mRNA_3655 0.71 +0.1
272,705 - 12023 mRNA_3655 0.86 -0.1
272,706 + 12023 mRNA_3655 0.86 -0.4
273,041 - 12024 mRNA_3656 0.30 -0.9
273,573 + 12025 mRNA_3657 0.60 -0.7
273,827 + -1.1
274,122 - -0.3
274,237 + -0.2
274,240 - +0.0

Or see this region's nucleotide sequence