Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3667

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12034 and 12035 are separated by 233 nucleotides12035 and 12036 are separated by 121 nucleotides mRNA_3666: 12034 - K16055 TPS trehalose 6-phosphate synthase/phosphatase, at 297,311 to 299,921 12034 mRNA_3667: 12035 - KOG3455 Predicted membrane protein, at 300,155 to 301,036 12035 mRNA_3668: 12036 - K08870 TWF twinfilin, at 301,158 to 305,676 12036

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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299,817 + -1.2
300,079 + -1.9
300,959 - -0.6
300,961 + +0.2
300,966 - +0.8
301,096 - -0.1
301,258 - -1.0
301,258 - +0.4
301,268 + -1.2
301,281 + +1.5
301,694 - 12036 mRNA_3668 0.12 -0.5
301,733 - 12036 mRNA_3668 0.13 +0.3

Or see this region's nucleotide sequence