Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3672

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12039 and 12040 are separated by 248 nucleotides mRNA_3671: 12039 - K07562 NMD3 nonsense-mediated mRNA decay protein 3, at 309,308 to 311,181 12039 mRNA_3672: 12040 - BLAST putative ribonuclease mrp protein subunit rmp1 [Diapo..., at 311,430 to 311,771 12040

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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311,239 + -0.1
311,239 - -0.1
311,357 - +2.8
311,375 + -0.3
311,387 - -2.3
311,387 + -2.3
311,394 - +0.2
311,397 - -2.1
311,400 + -0.0
311,416 + +0.1
311,423 + +2.0
312,623 + -0.1

Or see this region's nucleotide sequence