Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3715

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12082 and 12083 are separated by 234 nucleotides12083 and 12084 are separated by 288 nucleotides mRNA_3714: 12082 - K14006 SEC23 protein transport protein SEC23, at 412,824 to 415,636 12082 mRNA_3715: 12083 - K11713 PGTB1 geranylgeranyl transferase type-1 subunit beta, at 415,871 to 417,515 12083 mRNA_3716: 12084 - K13348 MPV17 protein Mpv17, at 417,804 to 418,761 12084

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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415,840 + +0.1
416,025 - +1.4
417,589 + +0.2
417,747 - -0.2
417,909 + 12084 mRNA_3716 0.11 -1.8
417,909 + 12084 mRNA_3716 0.11 -0.8

Or see this region's nucleotide sequence