Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3717

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12084 and 12085 are separated by 214 nucleotides12085 and 12086 are separated by 280 nucleotides mRNA_3716: 12084 - K13348 MPV17 protein Mpv17, at 417,804 to 418,761 12084 mRNA_3717: 12085 - K03979 obgE, cgtA GTPase, at 418,976 to 421,073 12085 mRNA_3718: 12086 - K00249 ACADM, acd acyl-CoA dehydrogenase, at 421,354 to 423,944 12086

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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418,615 - 12084 mRNA_3716 0.85 -1.0
418,792 + +2.2
421,136 - -1.4
421,137 + -3.2
421,279 - -2.3
421,284 + -0.9
421,289 - -0.1
421,297 - -0.2
421,312 + +0.3
421,312 + +0.7
421,452 - -0.3
421,460 - -0.1
421,481 - -0.2
421,482 - +1.7
421,487 + -0.0
421,752 + 12086 mRNA_3718 0.15 +1.1
421,817 + 12086 mRNA_3718 0.18 -0.2

Or see this region's nucleotide sequence