Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3724

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12092 and 12093 are separated by 416 nucleotides mRNA_3724: 12092 - KOG1744 Histone H2B, at 437,180 to 437,338 12092 mRNA_3725: 12093 - K18168 SDHAF2, SDH5 succinate dehydrogenase assembly factor 2, at 437,755 to 438,417 12093

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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436,668 - -2.0
436,688 + +0.0
436,693 + -0.6
436,907 - -1.2
436,979 - +0.8
436,986 + +2.1
437,437 - +1.5
437,447 + -0.7
437,832 - 12093 mRNA_3725 0.12 -0.1

Or see this region's nucleotide sequence