Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3766

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12132 and 12133 are separated by 154 nucleotides12133 and 12134 are separated by 100 nucleotides12134 and 12135 are separated by 155 nucleotides mRNA_3764: 12132 - K11808 ADE2 phosphoribosylaminoimidazole carboxylase, at 531,400 to 533,650 12132 mRNA_3765: 12133 - K02902 RP-L28, MRPL28, rpmB large subunit ribosomal protein L28, at 533,805 to 534,326 12133 mRNA_3766: 12134 - K20372 TBC1D20, GYP8 TBC1 domain family member 20, at 534,427 to 536,780 12134 mRNA_3767: 12135 - KOG4535 HEAT and armadillo repeat-containing protein, at 536,936 to 539,895 12135

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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533,560 - -0.4
533,685 - +2.2
533,694 + -0.5
533,694 - +1.4
533,722 + -1.4
534,314 + +0.4
534,437 - +0.3
534,438 - +0.3
534,446 + -0.6
534,452 + +2.2
535,927 - 12134 mRNA_3766 0.64 +0.2
535,931 + 12134 mRNA_3766 0.64 -0.0
535,949 + 12134 mRNA_3766 0.65 -0.1
535,956 + 12134 mRNA_3766 0.65 +1.6
536,212 - 12134 mRNA_3766 0.76 -1.0
536,385 - 12134 mRNA_3766 0.83 -0.6
536,522 + 12134 mRNA_3766 0.89 +0.6
536,556 + +0.1
536,650 + +0.3
536,673 - +0.3
536,710 + -0.3
536,814 - -0.2
536,816 - -2.9
537,440 - 12135 mRNA_3767 0.17 -0.8
537,575 - 12135 mRNA_3767 0.22 +0.2
537,581 + 12135 mRNA_3767 0.22 +0.6

Or see this region's nucleotide sequence