Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3774

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12142 and 12143 are separated by 663 nucleotides mRNA_3774: 12142 - K01764 E4.4.1.17 cytochrome c heme-lyase, at 551,229 to 552,274 12142 mRNA_3775: 12143 - KOG2913 Predicted membrane protein, at 552,938 to 553,662 12143

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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550,352 + -0.0
550,362 + +1.7
550,488 + -0.9
550,490 - -1.0
551,035 + +0.9
551,079 + +0.0
552,230 - -2.0
552,402 + -0.2
552,538 - +0.5
552,709 + +2.0
552,819 - -0.9
552,842 - -1.2
553,013 + 12143 mRNA_3775 0.10 +0.4

Or see this region's nucleotide sequence