Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3784

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12151 and 12152 are separated by 510 nucleotides12152 and 12153 are separated by 357 nucleotides mRNA_3783: 12151 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 572,145 to 573,439 12151 mRNA_3784: 12152 - KOG1188 WD40 repeat protein, at 573,950 to 575,324 12152 mRNA_3785: 12153 - K15178 RTF1 RNA polymerase-associated protein RTF1, at 575,682 to 577,961 12153

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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573,082 - 12151 mRNA_3783 0.72 -0.5
573,082 - 12151 mRNA_3783 0.72 -1.1
573,516 + -0.7
573,520 - -2.3
573,539 + -1.1
573,542 - -0.2
573,675 - +0.2
574,322 + 12152 mRNA_3784 0.27 +0.1
575,416 - -0.4
575,591 + -0.9
575,723 + +1.4
575,929 - 12153 mRNA_3785 0.11 -0.5
576,320 - 12153 mRNA_3785 0.28 -0.8

Or see this region's nucleotide sequence