Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3798

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12165 and 12166 are separated by 163 nucleotides12166 and 12167 are separated by 644 nucleotides mRNA_3797: 12165 - Hypothetical Protein, at 601,185 to 602,135 12165 mRNA_3798: 12166 - K14771 NOC4, UTP19 U3 small nucleolar RNA-associated protein 19, at 602,299 to 604,532 12166 mRNA_3799: 12167 - KOG1611 Predicted short chain-type dehydrogenase, at 605,177 to 606,005 12167

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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601,318 + 12165 mRNA_3797 0.14 -2.8
601,338 - 12165 mRNA_3797 0.16 -0.3
601,349 + 12165 mRNA_3797 0.17 +1.5
601,761 + 12165 mRNA_3797 0.61 -0.2
602,236 + +0.5
602,272 - -2.2
604,623 + -1.5
604,720 - -0.6
604,721 - +0.0
604,748 + -1.7
604,895 + -0.8
605,176 + +0.2
605,481 - 12167 mRNA_3799 0.37 +0.3

Or see this region's nucleotide sequence