Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3810

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12177 and 12178 are separated by 403 nucleotides12178 and 12179 are separated by 359 nucleotides mRNA_3809: 12177 - Hypothetical Protein, at 631,164 to 632,051 12177 mRNA_3810: 12178 - K12869 CRN, CRNKL1, CLF1, SYF3 crooked neck, at 632,455 to 635,215 12178 mRNA_3811: 12179 - Hypothetical Protein, at 635,575 to 638,591 12179

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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632,253 + +0.7
632,400 - +1.8
632,429 - -0.8
635,265 + +1.3
635,521 + +0.6
635,530 - +0.3
635,534 - -2.2
635,557 - -2.2
635,604 - -0.9
635,613 + -0.9
635,634 + -0.9
635,638 + -0.4
635,644 + -1.2
635,757 - -1.6
635,761 - +1.0
635,761 + -0.3
635,765 - -0.0
635,776 + -1.6
635,779 + +0.5
635,918 - 12179 mRNA_3811 0.11 -2.4
635,927 - 12179 mRNA_3811 0.12 +0.1
635,927 + 12179 mRNA_3811 0.12 -0.5
636,092 - 12179 mRNA_3811 0.17 -0.8
636,092 - 12179 mRNA_3811 0.17 -0.9
636,095 + 12179 mRNA_3811 0.17 -1.1
636,095 + 12179 mRNA_3811 0.17 -0.1

Or see this region's nucleotide sequence