Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3901

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12268 and 12269 are separated by 587 nucleotides12269 and 12270 are separated by 663 nucleotides mRNA_3900: 12268 - SUPERFAMILY--SSF55729, at 850,598 to 851,508 12268 mRNA_3901: 12269 - K00863 DAK, TKFC triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing), at 852,096 to 854,470 12269 mRNA_3902: 12270 - K12471 EPN epsin, at 855,134 to 857,273 12270

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
851,382 + 12268 mRNA_3900 0.86 -0.2
851,620 - -0.9
851,865 + +0.6
851,873 - -2.0
851,927 - +0.8
852,069 + +0.3
852,171 - -0.5
852,639 + 12269 mRNA_3901 0.23 +0.2
853,339 - 12269 mRNA_3901 0.52 -0.1
853,389 + 12269 mRNA_3901 0.54 +0.6
853,635 - 12269 mRNA_3901 0.65 -0.0
853,661 - 12269 mRNA_3901 0.66 -0.4
853,779 - 12269 mRNA_3901 0.71 +1.5
853,906 + 12269 mRNA_3901 0.76 -0.4
854,074 - 12269 mRNA_3901 0.83 +0.2
854,091 - 12269 mRNA_3901 0.84 -1.1
854,324 + -0.7
854,389 + -0.5
854,496 - +0.4
854,501 + +2.2
854,512 - -0.4
854,516 - +0.3
854,519 + +0.7
854,526 - -1.6
854,527 + -0.6
854,531 + -0.0
854,663 + -0.6
854,663 - -1.1
854,665 - +0.7
854,665 - -0.5
854,667 - +0.8
854,668 + -0.1
854,668 + -0.6
854,670 + +0.2
854,675 - -1.8
854,675 + +0.2
854,675 - +0.2
854,676 + -2.0
854,676 + -0.5
854,677 + +1.0
854,679 + -0.7
854,692 - +0.1
854,695 - -2.0
854,743 - +0.1
854,762 + -0.3
854,765 - -0.5
854,770 - -0.5
854,775 + +0.4
854,786 + -0.2
854,891 - -0.0
854,908 + -3.5
854,916 + +0.1
854,925 - -1.1
854,927 - +0.1
855,054 - +0.8
855,071 + +2.9

Or see this region's nucleotide sequence