Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3909

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12276 and 12277 are separated by 100 nucleotides12277 and 12278 are separated by 790 nucleotides mRNA_3908: 12276 - Interpro Protein of unknown function (DUF2945), at 870,118 to 872,012 12276 mRNA_3909: 12277 - K10638 UHRF1, NP95 E3 ubiquitin-protein ligase UHRF1, at 872,113 to 873,418 12277 mRNA_3910: 12278 - KOG0587 Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases, at 874,209 to 878,555 12278

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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871,417 - 12276 mRNA_3908 0.69 -1.4
871,713 + 12276 mRNA_3908 0.84 +0.6
871,874 + +0.2
872,153 + +1.5
872,198 + -0.4
872,611 - 12277 mRNA_3909 0.38 +1.3
872,731 + 12277 mRNA_3909 0.47 +0.2
872,732 - 12277 mRNA_3909 0.47 +0.5
872,773 + 12277 mRNA_3909 0.51 +2.3
872,874 - 12277 mRNA_3909 0.58 +0.5
873,278 + 12277 mRNA_3909 0.89 +0.4
873,470 - +0.8
873,478 - -1.2
873,496 + -3.0
873,496 - -0.0
873,515 - -1.6
873,516 - -1.6
873,526 - -0.3
873,626 - -0.3
874,083 - -0.9
874,104 - +1.4
874,111 + -0.1
874,230 - -2.2

Or see this region's nucleotide sequence