Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4138

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12505 and 12506 are separated by 639 nucleotides12506 and 12507 are separated by 335 nucleotides mRNA_4137: 12505 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 1,443,015 to 1,447,458 12505 mRNA_4138: 12506 - HMMPfam-Cytochrome c oxidase subunit VIIa-PF02238, at 1,448,098 to 1,448,646 12506 mRNA_4139: 12507 - K14846 RPF1 ribosome production factor 1, at 1,448,982 to 1,450,816 12507

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,447,212 - -0.4
1,447,217 + +0.0
1,447,478 - -1.0
1,447,570 - -1.9
1,447,770 - +1.6
1,447,788 + +0.4
1,447,947 + +0.3
1,447,950 + -0.4
1,448,046 + +0.9
1,448,060 + -0.9
1,448,060 - -0.9
1,448,215 - 12506 mRNA_4138 0.21 +0.3
1,448,363 + 12506 mRNA_4138 0.48 -1.4
1,448,439 - 12506 mRNA_4138 0.62 +0.7
1,448,524 - 12506 mRNA_4138 0.78 +0.1
1,448,661 - +1.4
1,448,663 - +0.5
1,448,669 - +0.4

Or see this region's nucleotide sequence