Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4154

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12521 and 12522 are separated by 399 nucleotides12522 and 12523 are separated by 270 nucleotides mRNA_4153: 12521 - K20347 TMED2, EMP24 p24 family protein beta-1, at 1,481,592 to 1,482,556 12521 mRNA_4154: 12522 - K17402 MRPS23 small subunit ribosomal protein S23, at 1,482,956 to 1,484,034 12522 mRNA_4155: 12523 - K12492 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1, at 1,484,305 to 1,486,151 12523

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
1,482,182 - 12521 mRNA_4153 0.61 +0.9
1,482,331 - 12521 mRNA_4153 0.77 -0.8
1,482,342 - 12521 mRNA_4153 0.78 -0.1
1,482,349 + 12521 mRNA_4153 0.78 -1.0
1,482,366 + 12521 mRNA_4153 0.80 +1.7
1,482,370 - 12521 mRNA_4153 0.81 -1.9
1,482,451 + 12521 mRNA_4153 0.89 -0.7
1,482,616 + +0.3
1,482,627 - +0.1
1,482,637 - -0.0
1,482,640 + +1.9
1,482,746 - -0.9
1,482,761 - +0.1
1,482,765 - +0.3
1,482,799 + +0.9
1,482,898 - -1.2
1,482,915 - +1.0
1,482,926 - +0.9
1,482,929 + -0.4
1,484,065 - -0.9
1,484,104 + +0.9
1,484,123 + +0.5
1,484,127 - -0.2
1,484,224 - -1.0
1,484,234 - +0.4
1,484,234 - +0.5
1,484,238 - -0.1
1,484,847 + 12523 mRNA_4155 0.29 -0.7
1,484,974 - 12523 mRNA_4155 0.36 -0.0

Or see this region's nucleotide sequence