Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4327

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12695 and 12696 are separated by 266 nucleotides mRNA_4327: 12695 - K18754 LIN28 protein lin-28, at 1,916,431 to 1,918,530 12695 mRNA_4328: 12696 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 1,918,797 to 1,920,453 12696

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,915,544 + -2.5
1,915,581 - +0.4
1,915,657 + +1.5
1,916,315 + -2.9
1,916,335 - +0.7
1,916,335 - -0.4
1,916,463 - -0.6
1,916,764 + 12695 mRNA_4327 0.16 +1.2
1,917,004 + 12695 mRNA_4327 0.27 -0.1
1,917,089 + 12695 mRNA_4327 0.31 +0.3
1,917,204 - 12695 mRNA_4327 0.37 -0.2
1,917,553 + 12695 mRNA_4327 0.53 -0.2
1,917,721 - 12695 mRNA_4327 0.61 -0.3
1,917,809 - 12695 mRNA_4327 0.66 -1.6
1,917,987 + 12695 mRNA_4327 0.74 +0.6
1,918,155 - 12695 mRNA_4327 0.82 +0.5
1,918,303 + 12695 mRNA_4327 0.89 -0.7
1,919,038 - 12696 mRNA_4328 0.15 +0.0

Or see this region's nucleotide sequence