Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4367

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12734 and 12735 are separated by 78 nucleotides12735 and 12736 are separated by 97 nucleotides mRNA_4366: 12734 - K11650 SMARCD SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D, at 22,211 to 24,480 12734 mRNA_4367: 12735 - K08856 STK16 serine/threonine kinase 16, at 24,559 to 26,572 12735 mRNA_4368: 12736 - K00652 bioF 8-amino-7-oxononanoate synthase, at 26,670 to 28,178 12736

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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24,389 + -0.7
24,522 - +0.6
24,750 - +0.9
24,869 + 12735 mRNA_4367 0.15 +0.7
24,884 + 12735 mRNA_4367 0.16 -0.3
24,982 + 12735 mRNA_4367 0.21 +0.1
25,125 + 12735 mRNA_4367 0.28 -0.1
25,231 - 12735 mRNA_4367 0.33 +1.0
25,540 + 12735 mRNA_4367 0.49 +2.1
25,723 - 12735 mRNA_4367 0.58 +1.8
26,112 - 12735 mRNA_4367 0.77 +0.4
26,284 + 12735 mRNA_4367 0.86 +0.1
26,307 + 12735 mRNA_4367 0.87 +0.7
26,442 + -0.4
26,467 + -1.2
26,605 - -1.0
26,610 + +2.4

Or see this region's nucleotide sequence