Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4379

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12746 and 12747 are separated by 383 nucleotides12747 and 12748 are separated by 315 nucleotides mRNA_4378: 12746 - KOG2432 Uncharacterized conserved protein, at 53,641 to 56,318 12746 mRNA_4379: 12747 - KOG4359 Protein kinase C inhibitor-like protein, at 56,702 to 58,135 12747 mRNA_4380: 12748 - K00550 OPI3 methylene-fatty-acyl-phospholipid synthase, at 58,451 to 59,547 12748

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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56,203 - -1.0
56,235 + -2.1
56,332 + -1.2
56,506 + +0.5
56,644 + -0.8
56,654 - +0.7
56,739 + -1.1
56,801 + -0.1
56,932 - 12747 mRNA_4379 0.16 +0.1
56,940 - 12747 mRNA_4379 0.17 +0.1
56,949 - 12747 mRNA_4379 0.17 +0.6
56,949 + 12747 mRNA_4379 0.17 -0.4
56,950 + 12747 mRNA_4379 0.17 -0.4
56,959 + 12747 mRNA_4379 0.18 -0.9
57,075 + 12747 mRNA_4379 0.26 -0.3
57,226 - 12747 mRNA_4379 0.37 +0.8
57,228 - 12747 mRNA_4379 0.37 +0.0
57,231 - 12747 mRNA_4379 0.37 +1.9
57,550 + 12747 mRNA_4379 0.59 +0.4
57,562 - 12747 mRNA_4379 0.60 +0.6
57,568 - 12747 mRNA_4379 0.60 +0.9
57,714 - 12747 mRNA_4379 0.71 -0.5
57,787 - 12747 mRNA_4379 0.76 -0.1
57,790 + 12747 mRNA_4379 0.76 -0.6
57,822 + 12747 mRNA_4379 0.78 -1.6
57,937 - 12747 mRNA_4379 0.86 -0.3
57,947 + 12747 mRNA_4379 0.87 +0.3
57,966 + 12747 mRNA_4379 0.88 +0.1
58,084 - +2.0
58,130 + +1.3
58,201 + -0.8
58,284 - +0.5
58,368 - +0.1
58,391 - -2.1
58,400 - +0.6
58,400 - -0.2
58,401 + +0.5
58,403 + +0.0
58,405 - +0.1
58,424 - -1.1
58,424 - +0.9
58,448 - -0.5
58,448 - +1.1
58,449 + -0.4
58,449 + -0.1
58,449 + -0.4
58,467 + -0.7
58,512 + +0.0
58,530 + -0.5
58,539 - -4.0
58,589 + 12748 mRNA_4380 0.13 -1.5
58,589 - 12748 mRNA_4380 0.13 -3.2
58,602 - 12748 mRNA_4380 0.14 -1.6
58,698 - 12748 mRNA_4380 0.23 -3.7
58,710 - 12748 mRNA_4380 0.24 -0.8
58,716 + 12748 mRNA_4380 0.24 -3.3
58,985 + 12748 mRNA_4380 0.49 -0.7

Or see this region's nucleotide sequence