Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4504

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12871 and 12872 are separated by 546 nucleotides12872 and 12873 are separated by 63 nucleotides12873 and 12874 overlap by 2 nucleotides mRNA_4503: 12871 - K12397 AP3B AP-3 complex subunit beta, at 335,099 to 337,846 12871 mRNA_4504: 12872 - Hypothetical Protein, at 338,393 to 338,917 12872 mRNA_4505: 12873 - K18172 CMC2 COX assembly mitochondrial protein 2, at 338,981 to 339,395 12873 mRNA_4506: 12874 - KOG4754 Predicted phosphoglycerate mutase, at 339,394 to 340,797 12874

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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338,090 - +0.5
338,237 - -0.2
338,243 - +1.2
338,248 + +1.3
338,279 + +1.0
338,400 - -0.7
338,402 - -2.7
338,412 + +0.8
338,422 + -0.4
338,682 + 12872 mRNA_4504 0.55 +1.4
338,699 + 12872 mRNA_4504 0.58 +0.1
338,699 + 12872 mRNA_4504 0.58 -2.3
339,130 - 12873 mRNA_4505 0.36 +0.5
339,137 - 12873 mRNA_4505 0.38 +0.6
339,142 + 12873 mRNA_4505 0.39 -0.9
339,154 - 12873 mRNA_4505 0.42 -1.1
339,261 - 12873 mRNA_4505 0.67 -2.4
339,274 + 12873 mRNA_4505 0.71 -0.9
339,279 - 12873 mRNA_4505 0.72 -0.4
339,421 + -1.3
339,446 - -0.3
339,465 + -0.3
339,579 - 12874 mRNA_4506 0.13 +2.3
339,732 + 12874 mRNA_4506 0.24 -0.3
339,887 + 12874 mRNA_4506 0.35 -1.0

Or see this region's nucleotide sequence