Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4531

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12898 and 12899 are separated by 92 nucleotides12899 and 12900 are separated by 329 nucleotides mRNA_4530: 12898 - K00605 gcvT, AMT aminomethyltransferase, at 393,210 to 395,082 12898 mRNA_4531: 12899 - K03671 trxA thioredoxin 1, at 395,175 to 396,195 12899 mRNA_4532: 12900 - K01247 alkA DNA-3-methyladenine glycosylase II, at 396,525 to 397,973 12900

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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394,722 + 12898 mRNA_4530 0.81 +0.0
394,898 + +0.2
395,059 + +2.5
395,465 - 12899 mRNA_4531 0.28 +1.0
395,500 + 12899 mRNA_4531 0.32 +1.0
395,520 - 12899 mRNA_4531 0.34 +0.2
395,952 + 12899 mRNA_4531 0.76 +0.3
396,307 + -0.7
396,465 - +0.3
396,480 + -2.3
396,492 - +0.5
396,586 + -0.1
396,612 - +0.7
396,654 + +0.2
396,777 + 12900 mRNA_4532 0.17 -0.6
396,879 - 12900 mRNA_4532 0.24 -0.1
397,128 - 12900 mRNA_4532 0.42 -0.7

Or see this region's nucleotide sequence