Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4551

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12918 and 12919 are separated by 231 nucleotides12919 and 12920 are separated by 425 nucleotides mRNA_4550: 12918 - K16186 RRAGC_D Ras-related GTP-binding protein C/D, at 438,083 to 440,152 12918 mRNA_4551: 12919 - HMMPfam-Whi5 like-PF08528, at 440,384 to 442,291 12919 mRNA_4552: 12920 - KOG2263 Methionine synthase II (cobalamin-independent), at 442,717 to 444,581 12920

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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440,153 + +0.9
440,561 + +0.9
440,574 - +0.3
440,891 - 12919 mRNA_4551 0.27 +0.3
441,443 - 12919 mRNA_4551 0.56 +0.4
441,449 + 12919 mRNA_4551 0.56 +0.2
441,614 - 12919 mRNA_4551 0.64 +0.5
441,626 - 12919 mRNA_4551 0.65 -2.1
441,633 + 12919 mRNA_4551 0.65 +0.5
441,634 + 12919 mRNA_4551 0.66 -2.4
441,750 - 12919 mRNA_4551 0.72 -0.5
441,926 + 12919 mRNA_4551 0.81 +1.4
442,201 - -3.0
442,202 - +0.9
442,212 + -1.9
442,337 - -2.1
442,339 + +0.6
442,340 - +1.3
442,351 + -0.4
442,383 + +1.6
442,495 - -0.7
442,503 - -0.8
442,511 + +2.0
442,517 + +1.3
442,523 - -0.8
442,524 + +0.2
442,529 + +0.3
442,530 - +0.4
442,757 - +1.0
442,875 + -0.1
442,964 + 12920 mRNA_4552 0.13 +0.7

Or see this region's nucleotide sequence