Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4561

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12928 and 12929 are separated by 208 nucleotides12929 and 12930 are separated by 495 nucleotides mRNA_4560: 12928 - Hypothetical Protein, at 463,085 to 464,279 12928 mRNA_4561: 12929 - K06990 MEMO1 MEMO1 family protein, at 464,488 to 466,003 12929 mRNA_4562: 12930 - K11366 USP22_27_51, UBP8 ubiquitin carboxyl-terminal hydrolase 22/27/51, at 466,499 to 468,748 12930

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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463,888 + 12928 mRNA_4560 0.67 +0.3
464,053 - 12928 mRNA_4560 0.81 +2.0
464,163 + -0.4
464,335 + -1.1
464,335 + -0.5
464,342 + +0.6
464,371 + +0.3
464,393 - -0.0
464,444 + +0.5
464,541 - +0.3
464,547 + -2.8
464,556 - +0.2
464,563 - -2.5
465,113 - 12929 mRNA_4561 0.41 -0.2
465,712 - 12929 mRNA_4561 0.81 +1.2
465,742 + 12929 mRNA_4561 0.83 -0.0
465,894 - +0.3
465,996 + -0.1
465,996 + -0.7
466,006 - -0.4
466,021 + -0.3
466,157 - -0.3
466,174 + +2.8
466,178 - +0.8
466,183 + -0.3
466,324 - +0.5
466,325 + -0.7
466,332 - -0.8
466,333 + -3.1
466,333 + -1.7
466,473 + -0.5
466,473 + -0.6
466,480 - +0.5
466,490 - +0.3
466,770 + 12930 mRNA_4562 0.12 +0.2
466,783 + 12930 mRNA_4562 0.13 -0.6
466,928 + 12930 mRNA_4562 0.19 -2.2
466,930 - 12930 mRNA_4562 0.19 +0.8
466,932 - 12930 mRNA_4562 0.19 +0.3

Or see this region's nucleotide sequence