Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4567

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12934 and 12935 are separated by 268 nucleotides12935 and 12936 are separated by 219 nucleotides mRNA_4566: 12934 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 479,407 to 483,783 12934 mRNA_4567: 12935 - K10743 RNASEH2A ribonuclease H2 subunit A, at 484,052 to 485,585 12935 mRNA_4568: 12936 - Hypothetical Protein, at 485,805 to 489,325 12936

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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483,245 + 12934 mRNA_4566 0.88 +0.1
483,686 + -0.9
483,830 + +0.9
483,830 - +0.3
483,848 - -2.0
483,922 - +1.5
483,938 - +1.7
483,988 - -0.0
484,000 - -0.3
484,002 + +0.1
484,018 + +0.2
484,697 + 12935 mRNA_4567 0.42 -0.6
485,134 - 12935 mRNA_4567 0.71 +0.0
485,251 - 12935 mRNA_4567 0.78 -0.6
485,252 + 12935 mRNA_4567 0.78 +0.1
485,885 + -1.7
486,172 + 12936 mRNA_4568 0.10 -0.6
486,349 - 12936 mRNA_4568 0.15 +2.0
486,444 + 12936 mRNA_4568 0.18 +0.3

Or see this region's nucleotide sequence