Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4573

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12940 and 12941 are separated by 123 nucleotides12941 and 12942 are separated by 54 nucleotides mRNA_4572: 12940 - K06963 TAN1, THUMPD1 tRNA acetyltransferase TAN1, at 495,766 to 497,109 12940 mRNA_4573: 12941 - K03142 TFIIH2, GTF2H2, SSL1 transcription initiation factor TFIIH subunit 2, at 497,233 to 498,989 12941 mRNA_4574: 12942 - K12184 VPS28 ESCRT-I complex subunit VPS28, at 499,044 to 500,144 12942

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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497,021 - -0.2
497,024 + +0.6
497,124 - +0.3
497,150 + -0.2
497,167 - +2.4
499,080 - -0.6
499,794 - 12942 mRNA_4574 0.68 -0.9
499,815 - 12942 mRNA_4574 0.70 +0.8

Or see this region's nucleotide sequence