Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4590

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12957 and 12958 are separated by 973 nucleotides12958 and 12959 are separated by 267 nucleotides mRNA_4589: 12957 - K14795 RRP36 ribosomal RNA-processing protein 36, at 535,476 to 536,079 12957 mRNA_4590: 12958 - Hypothetical Protein, at 537,053 to 538,336 12958 mRNA_4591: 12959 - KOG0379 Kelch repeat-containing proteins, at 538,604 to 541,004 12959

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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536,759 - +0.1
536,761 - +0.2
536,777 + +1.0
536,786 + -1.6
536,921 - -0.0
536,938 + -0.0
536,951 + +1.6
537,045 + +1.2
537,080 + -3.1
537,789 - 12958 mRNA_4590 0.57 -0.0
537,804 - 12958 mRNA_4590 0.58 -1.6
537,809 + 12958 mRNA_4590 0.59 -0.1
537,817 + 12958 mRNA_4590 0.60 +0.0
537,933 - 12958 mRNA_4590 0.69 +1.2
538,220 - +1.0
538,531 + +1.1
538,661 + -0.9
538,666 + -0.3
538,682 - +0.5
538,821 + -1.5
539,127 + 12959 mRNA_4591 0.22 +0.6

Or see this region's nucleotide sequence