Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4651

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13018 and 13019 are separated by 439 nucleotides13019 and 13020 are separated by 58 nucleotides mRNA_4650: 13018 - K02919 RP-L36, MRPL36, rpmJ large subunit ribosomal protein L36, at 695,007 to 695,565 13018 mRNA_4651: 13019 - Hypothetical Protein, at 696,005 to 696,627 13019 mRNA_4652: 13020 - Hypothetical Protein, at 696,686 to 697,396 13020

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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695,125 - 13018 mRNA_4650 0.21 +2.3
695,137 + 13018 mRNA_4650 0.23 -0.2
695,145 + 13018 mRNA_4650 0.25 +0.2
695,286 + 13018 mRNA_4650 0.50 +0.3
695,568 + +0.4
695,607 + +1.8
696,032 - +0.1
696,044 - -0.1
696,301 + 13019 mRNA_4651 0.48 +0.6
696,711 - +0.5
696,747 - +1.4
696,760 - 13020 mRNA_4652 0.10 -0.6
696,770 + 13020 mRNA_4652 0.12 -0.5
696,903 + 13020 mRNA_4652 0.31 -0.4
697,142 - 13020 mRNA_4652 0.64 +0.9
697,198 + 13020 mRNA_4652 0.72 +0.2
697,330 + +0.6
697,458 - +0.1
697,620 + -0.2
697,623 - -0.1

Or see this region's nucleotide sequence