Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4655

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13022 and 13023 are separated by 221 nucleotides13023 and 13024 are separated by 257 nucleotides mRNA_4654: 13022 - KOG4253 Tryptophan-rich basic nuclear protein, at 699,730 to 700,546 13022 mRNA_4655: 13023 - K03124 TFIIB, GTF2B, SUA7, tfb transcription initiation factor TFIIB, at 700,768 to 702,328 13023 mRNA_4656: 13024 - Hypothetical Protein, at 702,586 to 704,357 13024

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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700,148 + 13022 mRNA_4654 0.51 -0.3
700,165 - 13022 mRNA_4654 0.53 +0.8
700,419 - 13022 mRNA_4654 0.84 +0.2
700,600 - -2.1
700,605 + -0.8
702,336 + +0.4
702,359 + +1.6
702,523 + -0.2
702,565 + -1.2
702,674 - +1.3
702,820 - 13024 mRNA_4656 0.13 +0.4
702,927 - 13024 mRNA_4656 0.19 -0.0
702,936 + 13024 mRNA_4656 0.20 +2.6
703,098 - 13024 mRNA_4656 0.29 -0.2
703,257 + 13024 mRNA_4656 0.38 -0.3

Or see this region's nucleotide sequence