Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4676

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13043 and 13044 are separated by 360 nucleotides13044 and 13045 are separated by 441 nucleotides mRNA_4675: 13043 - SUPERFAMILY--SSF53448, at 748,031 to 749,259 13043 mRNA_4676: 13044 - K01101 E3.1.3.41 4-nitrophenyl phosphatase, at 749,620 to 750,873 13044 mRNA_4677: 13045 - K10426 DCTN4 dynactin 4, at 751,315 to 753,347 13045

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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749,560 - -0.0
749,561 - +0.3
750,131 + 13044 mRNA_4676 0.41 +0.7
750,873 - -0.9
750,891 + +0.5
750,896 - -1.7
750,903 - -0.3
750,903 + -0.4
750,905 + -0.3
750,906 + -1.5
750,911 + -0.9
750,926 + +0.5
751,012 - -0.3
751,015 - -0.2
751,072 + -0.2
751,074 - -0.0
751,192 - +1.0

Or see this region's nucleotide sequence