Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4751

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13118 and 13119 are separated by 288 nucleotides13119 and 13120 are separated by 250 nucleotides mRNA_4750: 13118 - Hypothetical Protein, at 919,411 to 921,092 13118 mRNA_4751: 13119 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 921,381 to 922,742 13119 mRNA_4752: 13120 - KOG1263 Multicopper oxidases, at 922,993 to 927,297 13120

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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920,913 - 13118 mRNA_4750 0.89 +0.3
920,933 - +0.5
920,969 - +0.3
921,040 - +0.7
921,064 - -0.0
921,209 + +0.0
921,260 + -3.0
921,337 + +0.2
921,346 - +0.8
921,372 - -1.0
921,373 + +1.8
921,504 - +0.6
921,518 - 13119 mRNA_4751 0.10 -1.6
921,538 + 13119 mRNA_4751 0.12 +1.5
921,583 + 13119 mRNA_4751 0.15 +0.1
921,801 + 13119 mRNA_4751 0.31 -0.0
921,844 + 13119 mRNA_4751 0.34 -0.3
922,065 - 13119 mRNA_4751 0.50 +0.4
922,244 + 13119 mRNA_4751 0.63 -1.7
922,295 - 13119 mRNA_4751 0.67 +1.1
922,370 + 13119 mRNA_4751 0.73 -0.2
922,541 + 13119 mRNA_4751 0.85 +0.5
922,542 - 13119 mRNA_4751 0.85 +0.1
922,551 - 13119 mRNA_4751 0.86 -3.2
922,585 + 13119 mRNA_4751 0.88 -1.1
922,697 + -1.1
923,294 - -0.9
923,310 - -0.6
923,474 + 13120 mRNA_4752 0.11 +0.9
923,596 - 13120 mRNA_4752 0.14 -0.4
923,728 + 13120 mRNA_4752 0.17 +1.3

Or see this region's nucleotide sequence